Whole genome sequencing (WGS) of enteric pathogens via next-generation sequencing (NGS)
| Data | Value |
|---|---|
| Method | Whole genome sequencing (WGS) of enteric pathogens via massively parallel sequencing. |
| CPT Code | N/A |
| Preferred Specimen | Referred isolate |
| Specimen Container | Agar Slant |
| Specimen Identification | Label specimen with patient's first and last name, DOB and date/time of collection. |
| Special Instructions | Organisms may be isolated from stool or blood cultures. |
| Shipping Requirements | Referred isolates on agar slants may be shipped at room temperature. Refer to normal shipping procedures for all other samples |
| Sample Rejection Criteria | Improper specimen transport Mislabeled specimen Unlabeled specimen Mis-identification of organism |
| Turn-around-time | 1-2 weeks (M-F) |